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Plos One : Mydas, an Extensible Java Das Server, Volume 7

By Haslam, Niall James

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Book Id: WPLBN0003957339
Format Type: PDF eBook :
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Reproduction Date: 2015

Title: Plos One : Mydas, an Extensible Java Das Server, Volume 7  
Author: Haslam, Niall James
Volume: Volume 7
Language: English
Subject: Journals, Science, Medical Science
Collections: Periodicals: Journal and Magazine Collection
Historic
Publication Date:
Publisher: Plos

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Haslam, N. J. (n.d.). Plos One : Mydas, an Extensible Java Das Server, Volume 7. Retrieved from http://worldebookfair.com/


Description
Description : A large number of diverse, complex, and distributed data resources are currently available in the Bioinformatics domain. The pace of discovery and the diversity of information means that centralised reference databases like UniProt and Ensembl cannot integrate all potentially relevant information sources. From a user perspective however, centralised access to all relevant information concerning a specific query is essential. The Distributed Annotation System (DAS) defines a communication protocol to exchange annotations on genomic and protein sequences: this standardisation enables clients to retrieve data from a myriad of sources, thus offering centralised access to end-users. We introduce MyDas, a web server that facilitates the publishing of biological annotations according to the DAS specification. It deals with the common functionality requirements of making data available, while also providing an extension mechanism in order to implement the specifics of data store interaction. MyDas allows the user to define where the required information is located along with its structure, and is then responsible for the communication protocol details.

 

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